SubtiBank SubtiBank
ylbJ [2017-09-26 10:37:40]
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ylbJ [2017-09-26 10:37:40]

unknown
locus
BSU15030
pI
10.27
mw
44.68 kDa
protein length
408 aa Sequence Blast
gene length
1224 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,570,574 → 1,571,800

    Phenotypes of a mutant

  • inactivation of ''[gene|40BCEB3648585961D22B71BBB4FB62EE4B3E360D|spoVV]'' eliminates [SW|sporulation] [Pubmed|26735940], this can be suppressed by inactivation of the genes of the [gene|EEDE6A22E91992ABCA677CAB7917B7168C5CB868|gerAA]-[gene|5FF739B8C087207039BB6DC293EE77F59337ED0B|gerAB]-[gene|D937E26DF69D49B1341B37596AC6A8FBEEF8BA2E|gerAC] operon [pubmed|28605069]

    • The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|40BCEB3648585961D22B71BBB4FB62EE4B3E360D|spoVV]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|12662922,15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulatory mechanism

  • [protein|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID]: repression, [Pubmed|15383836], in [regulon|90DCE4F286D2C151D8BDBF0E024E6BBEC94E2397|SpoIIID regulon]

    • regulation

  • expressed during sporulation in the mother cell ([protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]) [Pubmed|12662922,15699190]
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    Biological materials

    Mutant

  • MGNA-B246 (ylbJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1245 NBRP B. subtilis, Japan]
  • BKE15030 (Δ[gene|40BCEB3648585961D22B71BBB4FB62EE4B3E360D|spoVV]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACCTCCCCGATGC, downstream forward: _UP4_ACAAAAAAAGGATGAGTCAA
  • BKK15030 (Δ[gene|40BCEB3648585961D22B71BBB4FB62EE4B3E360D|spoVV]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15030 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACCTCCCCGATGC, downstream forward: _UP4_ACAAAAAAAGGATGAGTCAA

    • References

  • 12662922,15699190,15383836,26735940,28605069